GenomicusMetazoa v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for cyl-1 (WBGene00000876) (Caenorhabditis elegans)	AlignView depth	PhyloView depth
Metazoa	198 species	315 homologs (oldest homol.)
Eumetazoa	196 species	313 homologs
Bilateria	187 species	301 homologs (dupl. node) 299 homologs (dupl. node) 42 homologs
Protostomia	182 species	41 homologs
Ecdysozoa	167 species	32 homologs
Nematoda	16 species	26 homologs
Rhabditida	14 species	24 homologs
Rhabditina	8 species	12 homologs
Caenorhabditis	6 species	10 homologs
Caenorhabditis elegans	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'