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web-code version: 2021-08-15
database version: 51.01
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Genomicus 51.01 contains 2097662 genes from 117 extant species. This data was analysed with a new method called AGORA (Algorithm for Gene Order Reconstruction in Ancestors; Muffato et al. in preparation) to identify 1825824 ancestral genes from 81 ancestral species, grouped into 80684 blocks of collinear genes.

The following tables present statistics on the data used in Genomicus, and on the reconstructed blocks in the ancestral species.

1. For extant species, a "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
2. The average block length, the N25, N50 and N75 values do not take into account the singletons (blocks of one gene).

Nematoda	Genes	Contigs	Average size (nb genes)	N50 size (nb genes)	Genes not in contigs	Coverage (%)
Brugia malayi	11010	79	139.1	1843	20	99.8%
Caenorhabditis brenneri	30674	1172	25.7	97	581	98.1%
Caenorhabditis briggsae	20996	127	164.6	3260	93	99.6%
Caenorhabditis elegans	20191	7	2884.4	3285	0	100.0%
Caenorhabditis japonica	29931	2643	8.9	19	6477	78.4%
Caenorhabditis remanei	31436	1404	21.7	135	916	97.1%
Loa loa	14908	873	15.5	35	1379	90.7%
Onchocerca volvulus	12117	135	88.6	3497	153	98.7%
Pristionchus pacificus	25516	27	944.7	3875	9	100.0%
Strongyloides ratti	12464	53	234.4	3596	42	99.7%
Trichinella spiralis	16380	465	29.4	1541	2688	83.6%
Diptera	Genes	Contigs	Average size (nb genes)	N50 size (nb genes)	Genes not in contigs	Coverage (%)
Aedes aegypti	14718	191	75.0	4983	387	97.4%
Aedes albopictus	17535	3421	4.4	5	2412	86.2%
Anopheles albimanus	12179	25	486.7	2574	11	99.9%
Anopheles arabiensis	13271	198	66.3	426	142	98.9%
Anopheles atroparvus	13717	160	84.1	2931	265	98.1%
Anopheles christyi	10872	2270	3.5	4	2938	73.0%
Anopheles coluzzii Ngousso	12773	112	113.9	236	15	99.9%
Anopheles coluzzii	14464	366	37.4	351	760	94.7%
Anopheles culicifacies	14358	2709	4.2	5	3012	79.0%
Anopheles darlingi	10556	1273	7.6	12	888	91.6%
Anopheles dirus	12924	166	77.0	547	139	98.9%
Anopheles epiroticus	11956	774	15.1	29	277	97.7%
Anopheles farauti	12932	63	204.8	887	30	99.8%
Anopheles funestus	13094	3	4364.7	5541	0	100.0%
Anopheles gambiae	13094	8	1636.8	2950	0	100.0%
Anopheles maculatus	14858	1666	2.2	2	11124	25.1%
Anopheles melas	15367	3508	3.0	3	4978	67.6%
Anopheles merus	13149	308	42.1	115	195	98.5%
Anopheles minimus	12820	78	163.5	899	64	99.5%
Anopheles quadriannulatus	13436	344	38.2	91	306	97.7%
Anopheles sinensis China	19352	542	35.4	105	160	99.2%
Anopheles sinensis	12905	757	15.6	39	1073	91.7%
Anopheles stephensi Indian	11789	269	41.5	117	637	94.6%
Anopheles stephensi	13336	433	30.6	58	69	99.5%
Belgica antarctica	13510	1237	10.2	17	933	93.1%
Culex quinquefasciatus	18965	1456	12.7	25	536	97.2%
Culicoides sonorensis	15612	1993	7.1	11	1386	91.1%
Drosophila ananassae	14365	84	168.3	2703	227	98.4%
Drosophila erecta	13605	29	466.3	2624	82	99.4%
Drosophila grimshawi	13705	217	60.6	1388	561	95.9%
Drosophila melanogaster	13969	9	1551.8	2739	3	100.0%
Drosophila mojavensis	13425	45	294.6	2494	168	98.7%
Drosophila persimilis	16874	247	65.3	483	755	95.5%
Drosophila pseudoobscura pseudoobscura	14574	159	89.3	1363	376	97.4%
Drosophila sechellia	16465	295	53.6	760	660	96.0%
Drosophila simulans	14179	21	668.8	2819	134	99.1%
Drosophila virilis	13620	60	224.9	1860	124	99.1%
Drosophila willistoni	13783	69	196.1	699	253	98.2%
Drosophila yakuba	14824	176	81.8	2694	425	97.1%
Glossina austeni	19720	849	23.0	45	193	99.0%
Glossina brevipalpis	14656	545	26.6	56	143	99.0%
Glossina fuscipes fuscipes	20117	1069	18.6	34	234	98.8%
Glossina morsitans morsitans	12494	1810	6.2	9	1254	90.0%
Glossina pallidipes	19278	739	25.7	61	262	98.6%
Glossina palpalis gambiensis	20162	1120	17.5	32	516	97.4%
Lucilia cuprina	14452	1026	13.4	28	680	95.3%
Lutzomyia longipalpis	10426	1366	7.2	10	581	94.4%
Mayetiola destructor	19927	1015	15.6	120	4139	79.2%
Megaselia scalaris	11461	1658	2.4	2	7513	34.4%
Musca domestica	14402	1699	7.5	12	1606	88.8%
Phlebotomus papatasi	11391	2044	4.4	5	2366	79.2%
Stomoxys calcitrans	14078	1422	9.2	16	1060	92.5%
Teleopsis dalmanni	16570	2846	4.5	6	3775	77.2%
Lepidoptera	Genes	Contigs	Average size (nb genes)	N50 size (nb genes)	Genes not in contigs	Coverage (%)
Bombyx mori	14623	309	46.6	151	209	98.6%
Danaus plexippus	15128	548	27.0	51	319	97.9%
Heliconius melpomene	12669	1447	8.3	13	675	94.7%
Melitaea cinxia	16629	2812	5.4	7	1358	91.8%
Hymenoptera	Genes	Contigs	Average size (nb genes)	N50 size (nb genes)	Genes not in contigs	Coverage (%)
Apis mellifera	9935	23	431.2	595	17	99.8%
Atta cephalotes	10491	125	81.4	187	321	96.9%
Bombus impatiens	15896	709	21.8	69	443	97.2%
Bombus terrestris	10581	90	114.2	594	307	97.1%
Solenopsis invicta	14825	816	15.3	59	2326	84.3%
Other Metazoa	Genes	Contigs	Average size (nb genes)	N50 size (nb genes)	Genes not in contigs	Coverage (%)
Actinia equina	47671	1468	32.5	56	11	100.0%
Acyrthosiphon pisum	36195	2165	14.8	37	4098	88.7%
Adineta vaga	49300	1362	34.9	87	1729	96.5%
Amphimedon queenslandica	43615	4012	9.5	35	5456	87.5%
Anoplophora glabripennis	22253	1775	12.2	22	513	97.7%
Biomphalaria glabrata	25550	3694	5.0	7	7129	72.1%
Branchiostoma lanceolatum	35955	1272	26.2	91	2626	92.7%
Capitella teleta	32175	2431	11.3	27	4652	85.5%
Cimex lectularius	14083	173	81.2	147	38	99.7%
Clytia hemisphaerica	19132	714	26.6	59	166	99.1%
Crassostrea gigas	26089	2182	11.4	21	1132	95.7%
Daphnia magna	26646	1098	16.3	116	8798	67.0%
Daphnia pulex	30590	1193	24.1	157	1786	94.2%
Dendroctonus ponderosae	13088	877	13.7	56	1116	91.5%
Dinothrombium tinctorium	19024	4021	3.5	4	4811	74.7%
Folsomia candida	28732	115	249.7	798	18	99.9%
Helobdella robusta	23432	267	86.1	328	453	98.1%
Hofstenia miamia	22454	1170	18.6	31	695	96.9%
Ixodes scapularis ISE6	20488	3119	5.0	7	4924	76.0%
Ixodes scapularis	19062	1825	10.1	17	594	96.9%
Lepeophtheirus salmonis	13081	1254	9.8	16	849	93.5%
Leptotrombidium deliense	14667	2621	2.8	3	7265	50.5%
Lingula anatina	34105	2387	14.0	26	802	97.6%
Lottia gigantea	23340	577	39.5	161	547	97.7%
Mnemiopsis leidyi	16058	1154	13.4	22	537	96.7%
Nasonia vitripennis	13602	111	122.4	2232	18	99.9%
Nematostella vectensis	24773	1431	15.4	57	2667	89.2%
Octopus bimaculoides	33609	4898	6.2	9	3381	89.9%
Orchesella cincta	20247	2463	7.7	13	1364	93.3%
Pediculus humanus corporis	10785	362	29.4	49	156	98.6%
Rhodnius prolixus	15059	1048	13.1	31	1322	91.2%
Sarcoptes scabiei	10471	1703	5.1	7	1838	82.4%
Schistosoma mansoni	10772	263	40.4	866	156	98.6%
Stegodyphus mimosarum	27135	4829	5.1	7	2286	91.6%
Strigamia maritima	14992	1139	12.6	28	663	95.6%
Strongylocentrotus purpuratus	27447	118	231.6	1137	120	99.6%
Tetranychus urticae	17671	219	79.8	601	193	98.9%
Thelohanellus kitauei	15020	1333	10.4	19	1109	92.6%
Tigriopus californicus	15577	13	1194.5	1310	49	99.7%
Trialeurodes vaporariorum	18273	36	506.2	1479	50	99.7%
Tribolium castaneum	16590	248	65.0	1676	470	97.2%
Trichoplax adhaerens	11520	176	63.2	745	392	96.6%
Varroa destructor	10260	31	329.0	1762	61	99.4%
Zootermopsis nevadensis	14610	973	14.6	28	418	97.1%
Ancestors	Genes	Blocks	Average size (nb genes)	N50 size (nb genes)	Genes not in blocks	Coverage (%)
Acalyptratae	17461	1848	4.6	7	9031	48.3%
Acari	23237	611	2.1	2	21950	5.5%
Acariformes	14750	368	2.1	2	13977	5.2%
Actiniaria	20966	1855	2.6	2	16212	22.7%
Aculeata	13739	1571	5.5	8	5100	62.9%
Annelida	20300	892	2.2	2	18382	9.4%
Anopheles coluzzii anc	17923	559	26.4	479	3146	82.4%
Anopheles sinensis anc	15132	445	27.5	103	2892	80.9%
Anopheles stephensi anc	13427	187	64.7	247	1324	90.1%
Anopheles	23963	485	28.1	530	10328	56.9%
Apinae	11997	411	23.6	58	2304	80.8%
Apocrita	14575	1873	3.5	4	7978	45.3%
Arachnida	27618	767	2.1	2	26005	5.8%
Arthropoda	51695	1042	2.1	2	49460	4.3%
Bilateria	56484	1124	2.2	2	54053	4.3%
Bombus	12038	163	61.4	234	2029	83.1%
Caenorhabditis	24686	579	25.3	396	10020	59.4%
Calyptratae	19453	1048	10.4	28	8543	56.1%
Cellia	26103	472	32.0	2898	10976	58.0%
Chironomoidea	14320	1220	2.4	2	11425	20.2%
Cimicomorpha	13532	1245	2.6	2	10328	23.7%
Cnidaria	23361	519	2.1	2	22281	4.6%
Crustacea	19269	443	2.1	2	18338	4.8%
Cucujiformia	17756	2100	3.0	3	11373	35.9%
Culicidae	22465	1897	5.1	8	12851	42.8%
Culicinae	16942	1426	7.2	14	6657	60.7%
Culicomorpha	25413	2322	2.7	3	19108	24.8%
Cyclorrhapha	20931	1712	2.6	2	16493	21.2%
Daphnia	16426	1316	5.6	8	9043	44.9%
Deuterostomia	20654	862	2.2	2	18769	9.1%
Diptera	33490	2337	2.6	2	27447	18.0%
Drosophila	18644	475	26.7	282	5947	68.1%
Ecdysozoa	48781	727	2.1	2	47251	3.1%
Entomobryomorpha	14897	1034	2.9	3	11869	20.3%
Eumetazoa	45501	730	2.1	2	43963	3.4%
Gastropoda	20378	1175	2.2	2	17775	12.8%
Glossina	22479	792	18.5	162	7791	65.3%
Hemiptera	24622	1295	2.3	2	21702	11.9%
Hexapoda	39971	1040	2.2	2	37711	5.7%
Holometabola	42495	2614	2.6	2	35746	15.9%
Ixodes scapularis anc	19677	2965	4.4	5	6660	66.2%
Lophotrochozoa	41787	1922	2.3	2	37434	10.4%
Mandibulata	43507	954	2.2	2	41451	4.7%
Metazoa	12385	265	2.1	2	11828	4.5%
Mollusca	28222	1642	2.3	2	24520	13.1%
Muscinae	13793	1313	7.6	13	3844	72.1%
Myrmicinae	11757	621	14.4	34	2801	76.2%
Myzomyia	16402	231	56.6	1165	3323	79.7%
NAME_0	13828	137	90.6	403	1412	89.8%
NAME_1	20732	600	25.2	150	5632	72.8%
NAME_2	16259	317	40.6	446	3399	79.1%
Nematocera	30134	2479	2.7	3	23382	22.4%
Nematoda	13441	102	2.0	2	13235	1.5%
Nemorhina	20930	819	20.1	73	4461	78.7%
Neocellia	18046	303	40.4	164	5806	67.8%
Neomyzomyia	14440	226	55.8	515	1818	87.4%
Neoptera	48028	2307	2.4	2	42413	11.7%
Nymphalidae	17110	851	12.8	34	6208	63.7%
Nyssorhynchus	12691	550	20.0	60	1696	86.6%
Obtectomera	16826	1217	7.3	15	7929	52.9%
Onchocercidae	11064	239	37.8	244	2031	81.6%
Pancrustacea	44677	970	2.1	2	42594	4.7%
Paraneoptera	27505	1616	2.3	2	23740	13.7%
Parasitengona	12191	1033	2.4	2	9726	20.2%
Parasitiformes	13762	429	2.1	2	12863	6.5%
Phlebotominae	12441	1497	2.6	3	8483	31.8%
Podoplea	12469	375	2.1	2	11670	6.4%
Prostigmata	13045	383	2.1	2	12244	6.1%
Protostomia	64334	1332	2.2	2	61458	4.5%
Pyretophorus	20211	386	36.2	662	6251	69.1%
Rhabditida	14580	874	2.3	2	12610	13.5%
Rhabditina	13057	921	2.3	2	10961	16.1%
Schizophora	22828	2065	4.5	6	13614	40.4%
Sophophora	18074	394	33.1	196	5038	72.1%
Spiralia	41979	1132	2.1	2	39549	5.8%
Stegomyia	15246	1245	8.3	17	4935	67.6%
Sternorrhyncha	18376	761	2.2	2	16729	9.0%
gambiae species complex	24775	975	17.2	2429	7987	67.8%
melanogaster group	15835	327	39.8	188	2829	82.1%
melanogaster.subgroup	16268	134	105.9	2751	2074	87.3%
pseudoobscura subgroup	15238	194	68.6	518	1936	87.3%

GenomicusMetazoa — database version: 51.01 / Web-code version: 2021-08-15 — Dyogen Team