Root species for Andorra (FBgn0030898) (Drosophila melanogaster) | AlignView depth | PhyloView depth | |
---|---|---|---|
Metazoa | 198 species | ||
Eumetazoa | 196 species | ||
Bilateria | 187 species | ||
Protostomia | 182 species | ||
Ecdysozoa | 167 species | ||
Arthropoda | 150 species | ||
Mandibulata | 134 species | ||
Pancrustacea | 132 species | ||
Hexapoda | 124 species | ||
Neoptera | 120 species | ||
Holometabola | 109 species | ||
Diptera | 87 species | ||
Cyclorrhapha | 37 species | ||
Schizophora | 35 species | ||
Acalyptratae | 20 species | ||
Drosophila | 18 species | 15 homologs (oldest homol.) | |
Sophophora | 13 species | 10 homologs | |
melanogaster group | 8 species | 8 homologs | |
melanogaster.subgroup | 6 species | 6 homologs | |
Drosophila melanogaster | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'