Root species for cyl-1 (WBGene00000876) (Caenorhabditis elegans) | AlignView depth | PhyloView depth | |
---|---|---|---|
Metazoa | 198 species | 315 homologs (oldest homol.) | |
Eumetazoa | 196 species | 313 homologs | |
Bilateria | 187 species | 301 homologs (dupl. node) 299 homologs (dupl. node) 42 homologs | |
Protostomia | 182 species | 41 homologs | |
Ecdysozoa | 167 species | 32 homologs | |
Nematoda | 16 species | 26 homologs | |
Rhabditida | 14 species | 24 homologs | |
Rhabditina | 8 species | 12 homologs | |
Caenorhabditis | 6 species | 10 homologs | |
Caenorhabditis elegans | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'