GenomicusMetazoa v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Dyak\GE19330 (FBgn0068352) (Drosophila yakuba)	AlignView depth	PhyloView depth
Metazoa	198 species
Eumetazoa	196 species	47 homologs (oldest homol.)
Bilateria	187 species	43 homologs
Protostomia	182 species	40 homologs
Ecdysozoa	167 species	39 homologs
Arthropoda	150 species	28 homologs
Mandibulata	134 species	27 homologs
Pancrustacea	132 species	26 homologs
Hexapoda	124 species	22 homologs
Neoptera	120 species	21 homologs
Holometabola	109 species	20 homologs
Diptera	87 species	19 homologs
Cyclorrhapha	37 species	18 homologs
Schizophora	35 species	17 homologs
Acalyptratae	20 species	16 homologs
Drosophila	18 species	15 homologs
Sophophora	13 species	14 homologs
melanogaster group	8 species	10 homologs
melanogaster.subgroup	6 species	8 homologs
Drosophila yakuba	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'