GenomicusMetazoa v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Andorra (FBgn0030898) (Drosophila melanogaster)	AlignView depth	PhyloView depth
Metazoa	198 species
Eumetazoa	196 species
Bilateria	187 species
Protostomia	182 species
Ecdysozoa	167 species
Arthropoda	150 species
Mandibulata	134 species
Pancrustacea	132 species
Hexapoda	124 species
Neoptera	120 species
Holometabola	109 species
Diptera	87 species
Cyclorrhapha	37 species
Schizophora	35 species
Acalyptratae	20 species
Drosophila	18 species	15 homologs (oldest homol.)
Sophophora	13 species	10 homologs
melanogaster group	8 species	8 homologs
melanogaster.subgroup	6 species	6 homologs
Drosophila melanogaster	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'