DYOGEN group
web-code version: 2012-04-17
database version: 12.01
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GenomicusPlants 12.01 contains 0 genes from 0 extant species.
This data was downloaded from EnsemblGenomes release 12.
A "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
| Dicotyledones | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
|---|---|---|---|---|---|---|---|
| Populus trichocarpa | (extant sp.) | 41377 | 436 | 93.7 | 2145 | 540 | 98.7% |
| Glycine max | (extant sp.) | 46367 | 49 | 944.9 | 2298 | 68 | 99.9% |
| Arabidopsis thaliana | (extant sp.) | 27416 | 7 | 3916.6 | 5437 | 0 | 100.0% |
| Arabidopsis lyrata | (extant sp.) | 32667 | 273 | 119.1 | 4113 | 164 | 99.5% |
| Vitis vinifera | (extant sp.) | 29971 | 33 | 908.2 | 1454 | 0 | 100.0% |
| Monocotyledones | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Sorghum bicolor | (extant sp.) | 34496 | 60 | 572.3 | 3714 | 157 | 99.5% |
| Oryza indica | (extant sp.) | 40745 | 608 | 64.8 | 3163 | 1371 | 96.6% |
| Oryza glaberrima | (extant sp.) | 33164 | 410 | 79.7 | 2508 | 494 | 98.5% |
| Brachypodium distachyon | (extant sp.) | 26552 | 11 | 2413.0 | 5990 | 9 | 100.0% |
| Oryza sativa japonica | (extant sp.) | 57939 | 16 | 3621.2 | 4703 | 0 | 100.0% |
| Zea mays | (extant sp.) | 63331 | 13 | 4871.6 | 6764 | 0 | 100.0% |
| Other Plants | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Chlamydomonas reinhardtii | (extant sp.) | 14416 | 184 | 76.4 | 236 | 365 | 97.5% |
| Physcomitrella patens | (extant sp.) | 32273 | 628 | 50.6 | 99 | 490 | 98.5% |
| Selaginella moellendorffii | (extant sp.) | 34799 | 340 | 102.1 | 310 | 80 | 99.8% |
| Other eukaryotes | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Homo sapiens | (extant sp.) | 21626 | 84 | 257.2 | 901 | 24 | 99.9% |
| Caenorhabditis elegans | (extant sp.) | 20389 | 7 | 2912.7 | 3321 | 0 | 100.0% |
| Cyanidioschyzon merolae | (extant sp.) | 4998 | 22 | 227.2 | 249 | 0 | 100.0% |
| Drosophila melanogaster | (extant sp.) | 13781 | 14 | 984.4 | 2694 | 0 | 100.0% |
| Saccharomyces cerevisiae | (extant sp.) | 6696 | 18 | 372.0 | 513 | 0 | 100.0% |
| Ciona intestinalis | (extant sp.) | 14180 | 604 | 21.8 | 468 | 1024 | 92.8% |