DYOGEN group
web-code version: 2012-04-17
database version: 17.01
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GenomicusPlants 17.01 contains 0 genes from 0 extant species.
This data was downloaded from EnsemblGenomes release 17.
A "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
| Dicotyledones | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
|---|---|---|---|---|---|---|---|
| Solanum lycopersicum | (extant sp.) | 34675 | 13 | 2667.3 | 2543 | 0 | 100.0% |
| Solanum tuberosum | (extant sp.) | 39021 | 13 | 3001.6 | 3012 | 0 | 100.0% |
| Populus trichocarpa | (extant sp.) | 41377 | 436 | 93.7 | 2145 | 540 | 98.7% |
| Glycine max | (extant sp.) | 54174 | 62 | 872.4 | 2658 | 86 | 99.8% |
| Vitis vinifera | (extant sp.) | 29927 | 33 | 906.9 | 1450 | 0 | 100.0% |
| Brassica rapa subsp. pekinensis | (extant sp.) | 41018 | 147 | 278.1 | 3999 | 137 | 99.7% |
| Arabidopsis lyrata subsp. lyrata | (extant sp.) | 32667 | 273 | 119.1 | 4113 | 164 | 99.5% |
| Arabidopsis thaliana | (extant sp.) | 27416 | 7 | 3916.6 | 5437 | 0 | 100.0% |
| Monocotyledones | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Sorghum bicolor | (extant sp.) | 34496 | 60 | 572.3 | 3714 | 157 | 99.5% |
| Setaria italica | (extant sp.) | 35471 | 31 | 1142.8 | 4216 | 45 | 99.9% |
| Hordeum vulgare subsp. vulgare | (extant sp.) | 24211 | 66 | 334.4 | 1982 | 2138 | 91.2% |
| Oryza sativa Indica Group | (extant sp.) | 40745 | 608 | 64.8 | 3163 | 1371 | 96.6% |
| Oryza glaberrima | (extant sp.) | 33164 | 410 | 79.7 | 2508 | 494 | 98.5% |
| Zea mays | (extant sp.) | 63331 | 13 | 4871.6 | 6764 | 0 | 100.0% |
| Oryza sativa Japonica Group | (extant sp.) | 57939 | 16 | 3621.2 | 4703 | 0 | 100.0% |
| Brachypodium distachyon | (extant sp.) | 26552 | 11 | 2413.0 | 5990 | 9 | 100.0% |
| Oryza brachyantha | (extant sp.) | 32037 | 130 | 245.8 | 2613 | 80 | 99.8% |
| Plants | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Musa acuminata subsp. malaccensis | (extant sp.) | 36519 | 12 | 3043.2 | 3106 | 0 | 100.0% |
| Chlamydomonas reinhardtii | (extant sp.) | 14416 | 184 | 76.4 | 236 | 365 | 97.5% |
| Selaginella moellendorffii | (extant sp.) | 34799 | 340 | 102.1 | 310 | 80 | 99.8% |
| Physcomitrella patens subsp. patens | (extant sp.) | 32273 | 628 | 50.6 | 99 | 490 | 98.5% |
| Other eukaryotes | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Homo sapiens | (extant sp.) | 22679 | 160 | 141.5 | 916 | 44 | 99.8% |
| Cyanidioschyzon merolae strain 10D | (extant sp.) | 4998 | 22 | 227.2 | 249 | 0 | 100.0% |
| Caenorhabditis elegans | (extant sp.) | 20517 | 7 | 2931.0 | 3326 | 0 | 100.0% |
| Ciona savignyi | (extant sp.) | 11604 | 284 | 40.7 | 143 | 59 | 99.5% |
| Saccharomyces cerevisiae S288c | (extant sp.) | 6692 | 17 | 393.6 | 513 | 0 | 100.0% |
| Drosophila melanogaster | (extant sp.) | 13937 | 14 | 995.5 | 2735 | 0 | 100.0% |