GenomicusPlants v49.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PGSC0003DMG400006482 (solanum.tuberosum)	AlignView depth	PhyloView depth
eukaryota	158 species
archaeplastida	148 species
viridiplantae	142 species
streptophyta	138 species	789 homologs (oldest homol.)
embryophyta	136 species	787 homologs
magnoliophyta	133 species	786 homologs
mesangiospermae	131 species	782 homologs (dupl. node) 776 homologs (dupl. node) 375 homologs (dupl. node) 372 homologs (dupl. node) 207 homologs
pentapetalae	74 species	204 homologs (dupl. node) 202 homologs (dupl. node) 148 homologs
asterids	15 species	57 homologs (dupl. node) 33 homologs
solanaceae	6 species	16 homologs (dupl. node) 11 homologs (dupl. node) 6 homologs
solanum	3 species	3 homologs
solanum.tuberosum	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'