Statistics on modern & ancestral genomes
Genomicus 49.01 contains 3262124 genes from 99 extant species.
This data was analysed with a new method called AGORA (Algorithm for Gene Order Reconstruction in Ancestors; Muffato et al. in preparation) to identify 2277838 ancestral genes from 59 ancestral species, grouped into 96373 blocks of collinear genes.
The following tables present statistics on the data used in Genomicus, and on the reconstructed blocks in the ancestral species.
- For extant species, a "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
- The average block length, the N25, N50 and N75 values do not take into account the singletons (blocks of one gene).
| |
| Dicotyledones | Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| actinidia.chinensis | 33044 | 37 | 891.4 | 1100 | 64 | 99.8% |
| arabidopsis.halleri | 32158 | 772 | 40.9 | 172 | 559 | 98.3% |
| arabidopsis.lyrata | 32667 | 273 | 119.1 | 4113 | 164 | 99.5% |
| arabidopsis.thaliana | 27628 | 7 | 3946.9 | 5455 | 0 | 100.0% |
| arabis.alpina | 21609 | 345 | 58.6 | 2472 | 1403 | 93.5% |
| beta.vulgaris | 26521 | 416 | 57.1 | 2014 | 2782 | 89.5% |
| brassica.napus | 101040 | 3981 | 24.4 | 101 | 3960 | 96.1% |
| brassica.oleracea | 59220 | 435 | 130.6 | 5842 | 2421 | 95.9% |
| brassica.rapa | 41018 | 147 | 278.1 | 3999 | 137 | 99.7% |
| camelina.sativa | 89275 | 164 | 524.1 | 4238 | 3323 | 96.3% |
| cannabis.sativa.female | 27236 | 96 | 283.3 | 2661 | 40 | 99.9% |
| capsicum.annuum | 35845 | 304 | 116.1 | 2505 | 558 | 98.4% |
| citrullus.lanatus | 22541 | 11 | 2049.2 | 2179 | 0 | 100.0% |
| citrus.clementina | 25000 | 34 | 734.8 | 2547 | 16 | 99.9% |
| coffea.canephora | 25574 | 631 | 38.5 | 1753 | 1294 | 94.9% |
| corchorus.capsularis | 29356 | 4827 | 5.3 | 7 | 3591 | 87.8% |
| cucumis.melo | 28299 | 12 | 2358.2 | 2250 | 1 | 100.0% |
| cucumis.sativus | 23780 | 7 | 3397.1 | 3497 | 0 | 100.0% |
| cynara.cardunculus | 26505 | 2724 | 9.0 | 19 | 1867 | 93.0% |
| daucus.carota | 32109 | 135 | 235.9 | 3740 | 264 | 99.2% |
| glycine.max | 55897 | 74 | 754.4 | 2743 | 71 | 99.9% |
| gossypium.raimondii | 38208 | 85 | 448.9 | 2804 | 48 | 99.9% |
| helianthus.annuus | 52191 | 105 | 496.2 | 3156 | 86 | 99.8% |
| ipomoea.triloba | 31358 | 16 | 1959.9 | 2033 | 0 | 100.0% |
| lupinus.angustifolius | 33074 | 729 | 44.1 | 1453 | 954 | 97.1% |
| malus.domestica.golden | 40624 | 17 | 2389.6 | 2347 | 0 | 100.0% |
| manihot.esculenta | 33044 | 239 | 137.3 | 1747 | 240 | 99.3% |
| medicago.truncatula | 50444 | 432 | 115.4 | 6160 | 601 | 98.8% |
| nicotiana.attenuata | 33320 | 3625 | 8.5 | 13 | 2351 | 92.9% |
| olea.europaea.sylvestris | 50678 | 1859 | 25.9 | 1091 | 2469 | 95.1% |
| phaseolus.vulgaris | 28134 | 34 | 825.8 | 2779 | 57 | 99.8% |
| pistacia.vera | 31784 | 1170 | 27.0 | 54 | 138 | 99.6% |
| populus.trichocarpa | 41335 | 274 | 150.5 | 2242 | 105 | 99.7% |
| prunus.avium | 42794 | 2425 | 16.5 | 42 | 2711 | 93.7% |
| prunus.dulcis | 27963 | 1370 | 20.3 | 66 | 214 | 99.2% |
| prunus.persica | 26873 | 24 | 1118.9 | 3161 | 19 | 99.9% |
| rosa.chinensis | 45464 | 36 | 1262.6 | 6289 | 9 | 100.0% |
| solanum.lycopersicum | 34429 | 147 | 232.6 | 2545 | 233 | 99.3% |
| solanum.tuberosum | 39021 | 13 | 3001.6 | 3012 | 0 | 100.0% |
| theobroma.cacao.criollo | 21146 | 10 | 2114.6 | 2353 | 0 | 100.0% |
| theobroma.cacao.matina | 29188 | 50 | 582.8 | 3178 | 48 | 99.8% |
| trifolium.pratense | 39917 | 1301 | 25.1 | 3162 | 7292 | 81.7% |
| vigna.angularis | 33860 | 279 | 121.2 | 2767 | 42 | 99.9% |
| vigna.radiata | 22368 | 257 | 86.4 | 1458 | 155 | 99.3% |
| vitis.vinifera | 29927 | 33 | 906.9 | 1450 | 0 | 100.0% |
| |
| Monocotyledones | Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| aegilops.tauschii | 39614 | 134 | 292.6 | 5940 | 410 | 99.0% |
| ananas.comosus | 25783 | 25 | 1031.3 | 984 | 0 | 100.0% |
| brachypodium.distachyon | 34310 | 7 | 4901.0 | 7631 | 3 | 100.0% |
| dioscorea.rotundata | 34551 | 762 | 44.7 | 1399 | 469 | 98.6% |
| eragrostis.curvula | 55182 | 767 | 71.8 | 3806 | 117 | 99.8% |
| eragrostis.tef | 41555 | 5272 | 7.6 | 11 | 1744 | 95.8% |
| hordeum.vulgare | 37705 | 10 | 3770.5 | 5280 | 0 | 100.0% |
| hordeum.vulgare.goldenpromise | 58815 | 8 | 7351.9 | 8430 | 0 | 100.0% |
| leersia.perrieri | 29078 | 12 | 2423.2 | 2381 | 0 | 100.0% |
| musa.acuminata | 36519 | 12 | 3043.2 | 3106 | 0 | 100.0% |
| oryza.barthii | 34575 | 12 | 2881.2 | 2803 | 0 | 100.0% |
| oryza.brachyantha | 32037 | 130 | 245.8 | 2613 | 80 | 99.8% |
| oryza.glaberrima | 33164 | 410 | 79.7 | 2508 | 494 | 98.5% |
| oryza.glumipatula | 35735 | 12 | 2977.9 | 2939 | 0 | 100.0% |
| oryza.indica | 40745 | 608 | 64.8 | 3163 | 1371 | 96.6% |
| oryza.longistaminata | 31686 | 3435 | 7.6 | 12 | 5709 | 82.0% |
| oryza.meridionalis | 29308 | 12 | 2442.3 | 2532 | 0 | 100.0% |
| oryza.nivara | 36313 | 12 | 3026.1 | 2977 | 0 | 100.0% |
| oryza.punctata | 31762 | 12 | 2646.8 | 2537 | 0 | 100.0% |
| oryza.rufipogon | 37071 | 12 | 3089.2 | 3004 | 0 | 100.0% |
| oryza.sativa | 35775 | 14 | 2555.4 | 2971 | 0 | 100.0% |
| panicum.hallii.fil2 | 33805 | 36 | 937.8 | 4392 | 43 | 99.9% |
| panicum.hallii.hal2 | 33263 | 13 | 2558.5 | 4270 | 2 | 100.0% |
| saccharum.spontaneum | 53284 | 32 | 1665.1 | 1602 | 0 | 100.0% |
| setaria.italica | 35831 | 31 | 1154.4 | 4252 | 45 | 99.9% |
| setaria.viridis | 38334 | 10 | 3833.4 | 4611 | 0 | 100.0% |
| sorghum.bicolor | 34118 | 21 | 1621.5 | 3784 | 66 | 99.8% |
| triticum.aestivum.A | 35239 | 7 | 5034.1 | 5213 | 0 | 100.0% |
| triticum.aestivum.B | 35523 | 7 | 5074.7 | 4848 | 0 | 100.0% |
| triticum.aestivum.D | 34124 | 7 | 4874.9 | 5306 | 0 | 100.0% |
| triticum.aestivum.U | 2659 | 1 | 2659.0 | 2659 | 0 | 100.0% |
| triticum.dicoccoides.A | 30726 | 7 | 4389.4 | 4568 | 0 | 100.0% |
| triticum.dicoccoides.B | 31843 | 7 | 4549.0 | 4232 | 0 | 100.0% |
| triticum.turgidum.A | 31710 | 7 | 4530.0 | 4682 | 0 | 100.0% |
| triticum.turgidum.B | 32270 | 7 | 4610.0 | 5045 | 0 | 100.0% |
| triticum.turgidum.U | 2565 | 1 | 2565.0 | 2565 | 0 | 100.0% |
| triticum.urartu | 33482 | 7940 | 3.1 | 3 | 8796 | 73.7% |
| zea.mays | 39591 | 65 | 608.4 | 4115 | 43 | 99.9% |
| |
| Plants | Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| amborella.trichopoda | 27313 | 420 | 63.0 | 232 | 848 | 96.9% |
| chara.braunii | 34718 | 1296 | 26.0 | 45 | 959 | 97.2% |
| chlamydomonas.reinhardtii | 17743 | 48 | 369.6 | 1253 | 4 | 100.0% |
| marchantia.polymorpha | 19287 | 339 | 55.6 | 127 | 424 | 97.8% |
| nymphaea.colorata | 28438 | 14 | 2031.3 | 1997 | 0 | 100.0% |
| ostreococcus.lucimarinus | 7603 | 21 | 362.0 | 421 | 0 | 100.0% |
| physcomitrium.patens | 32234 | 27 | 1193.9 | 1224 | 0 | 100.0% |
| selaginella.moellendorffii | 34799 | 340 | 102.1 | 310 | 80 | 99.8% |
| |
| Other eukaryotes | Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| caenorhabditis.elegans | 20191 | 7 | 2884.4 | 3285 | 0 | 100.0% |
| chondrus.crispus | 9807 | 544 | 17.8 | 31 | 113 | 98.8% |
| ciona.savignyi | 11616 | 285 | 40.6 | 143 | 59 | 99.5% |
| cyanidioschyzon.merolae | 4973 | 22 | 226.0 | 249 | 0 | 100.0% |
| drosophila.melanogaster | 13947 | 9 | 1549.3 | 2735 | 3 | 100.0% |
| galdieria.sulphuraria | 6622 | 221 | 29.5 | 90 | 92 | 98.6% |
| homo.sapiens | 23117 | 284 | 81.1 | 876 | 74 | 99.7% |
| saccharomyces.cerevisiae | 6600 | 17 | 388.2 | 505 | 0 | 100.0% |
| |
| Ancestors | Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| NAME_0 | 36788 | 1419 | 17.6 | 791 | 11874 | 67.7% |
| NoName1 | 28825 | 421 | 53.8 | 1069 | 6163 | 78.6% |
| NoName2 | 44960 | 2650 | 8.5 | 91 | 22343 | 50.3% |
| NoName3 | 29506 | 516 | 42.5 | 1694 | 7565 | 74.4% |
| NoName4 | 33054 | 975 | 18.3 | 230 | 15179 | 54.1% |
| NoName5 | 48516 | 3338 | 6.6 | 30 | 26609 | 45.2% |
| NoName6 | 61830 | 3937 | 6.3 | 23 | 36942 | 40.3% |
| amygdaleae | 32825 | 739 | 28.3 | 1180 | 11881 | 63.8% |
| amygdaloideae | 29824 | 483 | 38.5 | 1099 | 11220 | 62.4% |
| andropogoneae | 40957 | 1602 | 15.4 | 452 | 16207 | 60.4% |
| arabidopsis | 33844 | 432 | 59.4 | 2612 | 8176 | 75.8% |
| archaeplastida | 12330 | 67 | 2.2 | 2 | 12185 | 1.2% |
| asterids | 73175 | 6362 | 5.2 | 8 | 39804 | 45.6% |
| bilateria | 8815 | 41 | 2.1 | 2 | 8728 | 1.0% |
| bop.clade | 52664 | 967 | 22.5 | 579 | 30890 | 41.3% |
| brassica | 96754 | 7690 | 8.0 | 20 | 34926 | 63.9% |
| brassicaceae | 43245 | 891 | 26.8 | 1279 | 19370 | 55.2% |
| campanulids | 39783 | 5288 | 3.4 | 4 | 22016 | 44.7% |
| chloridoideae | 36894 | 1617 | 13.3 | 53 | 15371 | 58.3% |
| chlorophyta | 7658 | 26 | 2.0 | 2 | 7606 | 0.7% |
| chordata | 8311 | 43 | 2.1 | 2 | 8221 | 1.1% |
| commelinids | 48584 | 3590 | 3.2 | 3 | 37127 | 23.6% |
| cucumis | 22705 | 317 | 59.0 | 719 | 3988 | 82.4% |
| cucurbitaceae | 23164 | 630 | 28.0 | 445 | 5510 | 76.2% |
| cyanidiaceae | 4823 | 76 | 3.3 | 2 | 4571 | 5.2% |
| ecdysozoa | 7980 | 24 | 2.2 | 2 | 7928 | 0.7% |
| embryophyta | 19474 | 184 | 2.1 | 2 | 19089 | 2.0% |
| eukaryota | 11096 | 59 | 2.0 | 2 | 10977 | 1.1% |
| fabids | 64577 | 3622 | 7.5 | 43 | 37580 | 41.8% |
| hordeum | 40221 | 1493 | 16.3 | 105 | 15895 | 60.5% |
| magnoliophyta | 19346 | 190 | 2.3 | 2 | 18916 | 2.2% |
| malpighiales | 25069 | 1241 | 13.9 | 47 | 7761 | 69.0% |
| malvaceae | 29484 | 847 | 22.3 | 284 | 10590 | 64.1% |
| malvids | 49504 | 1870 | 11.8 | 203 | 27396 | 44.7% |
| mesangiospermae | 56439 | 2454 | 3.8 | 4 | 47218 | 16.3% |
| opisthokonta | 6416 | 55 | 2.0 | 2 | 6305 | 1.7% |
| oryza | 94571 | 6026 | 8.4 | 112 | 44252 | 53.2% |
| oryza_sativa | 65990 | 3884 | 11.3 | 1658 | 22235 | 66.3% |
| oryzinae | 43025 | 910 | 26.1 | 850 | 19303 | 55.1% |
| panicoideae | 52788 | 1555 | 21.3 | 1135 | 19733 | 62.6% |
| papilionoideae | 44813 | 3577 | 5.9 | 14 | 23830 | 46.8% |
| pentapetalae | 75776 | 2651 | 7.3 | 68 | 56388 | 25.6% |
| phaseoleae | 32755 | 765 | 29.2 | 919 | 10416 | 68.2% |
| poaceae | 73765 | 2109 | 11.9 | 292 | 48673 | 34.0% |
| pooideae | 42342 | 1107 | 18.4 | 206 | 21929 | 48.2% |
| rhodophyta | 5467 | 42 | 4.0 | 7 | 5298 | 3.1% |
| rosales | 35732 | 1368 | 12.1 | 71 | 19235 | 46.2% |
| rosids | 81681 | 4524 | 6.5 | 65 | 52076 | 36.2% |
| solanaceae | 34933 | 1915 | 10.1 | 40 | 15583 | 55.4% |
| solanum | 30799 | 666 | 32.0 | 776 | 9501 | 69.2% |
| streptophyta | 12821 | 100 | 2.2 | 2 | 12605 | 1.7% |
| theobroma | 23732 | 126 | 162.7 | 2257 | 3230 | 86.4% |
| trifolieae | 32786 | 1270 | 15.1 | 94 | 13638 | 58.4% |
| triticeae | 51627 | 1708 | 14.1 | 140 | 27488 | 46.8% |
| triticinae | 60402 | 2037 | 15.3 | 419 | 29331 | 51.4% |
| triticinae_a | 42712 | 597 | 52.5 | 4122 | 11386 | 73.3% |
| triticum | 71496 | 2789 | 14.8 | 334 | 30287 | 57.6% |
| vigna | 26577 | 413 | 52.7 | 799 | 4832 | 81.8% |
| viridiplantae | 11808 | 78 | 2.2 | 2 | 11640 | 1.4% |
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