Root species for PGSC0003DMG400006482 (solanum.tuberosum) | AlignView depth | PhyloView depth | |
---|---|---|---|
eukaryota | 158 species | ||
archaeplastida | 148 species | ||
viridiplantae | 142 species | ||
streptophyta | 138 species | 789 homologs (oldest homol.) | |
embryophyta | 136 species | 787 homologs | |
magnoliophyta | 133 species | 786 homologs | |
mesangiospermae | 131 species | 782 homologs (dupl. node) 776 homologs (dupl. node) 375 homologs (dupl. node) 372 homologs (dupl. node) 207 homologs | |
pentapetalae | 74 species | 204 homologs (dupl. node) 202 homologs (dupl. node) 148 homologs | |
asterids | 15 species | 57 homologs (dupl. node) 33 homologs | |
solanaceae | 6 species | 16 homologs (dupl. node) 11 homologs (dupl. node) 6 homologs | |
solanum | 3 species | 3 homologs | |
solanum.tuberosum | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'