Root species for LIR1 (Os01g0102900) (oryza.sativa) | AlignView depth | PhyloView depth | |
---|---|---|---|
eukaryota | 158 species | ||
archaeplastida | 148 species | ||
viridiplantae | 142 species | ||
streptophyta | 138 species | ||
embryophyta | 136 species | ||
magnoliophyta | 133 species | ||
mesangiospermae | 131 species | ||
commelinids | 54 species | ||
poaceae | 51 species | 62 homologs (oldest homol.) | |
bop.clade | 36 species | 36 homologs | |
oryzinae | 15 species | 15 homologs (dupl. node) 12 homologs | |
oryza | 13 species | 10 homologs | |
oryza_sativa | 5 species | 4 homologs | |
oryza.sativa | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'