GenomicusProtists v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PF3D7_0527000 (Plasmodium falciparum 3D7)	AlignView depth	PhyloView depth
Eukaryota	200 species	2026 homologs (oldest homol. - dupl. node) 1749 homologs (dupl. node) 1287 homologs (dupl. node) 1035 homologs (dupl. node) 517 homologs (dupl. node) 241 homologs (dupl. node) 236 homologs (dupl. node) 226 homologs (dupl. node) 191 homologs (dupl. node) 187 homologs (dupl. node) 82 homologs
Alveolata	77 species	77 homologs
Apicomplexa	62 species	60 homologs (dupl. node) 51 homologs (dupl. node) 48 homologs
Aconoidasida	36 species	33 homologs
Plasmodium	25 species	22 homologs
Plasmodium Laverania	6 species	4 homologs
Plasmodium falciparum 3D7	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'