The following tables present statistics on the data used in Genomicus, and on the reconstructed blocks in the ancestral species.
|
Rhizaria | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Bigelowiella natans CCMP2755 | 21706 | 204 | 106.1 | 200 | 56 | 99.7% |
Plasmodiophora brassicae | 9727 | 130 | 74.8 | 231 | 2 | 100.0% |
Reticulomyxa filosa | 39963 | 8124 | 3.0 | 3 | 15558 | 61.1% |
|
Kinetoplastida | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Angomonas deanei | 16888 | 987 | 3.1 | 3 | 13855 | 18.0% |
Leishmania donovani | 8032 | 36 | 223.1 | 257 | 0 | 100.0% |
Leishmania infantum | 8526 | 36 | 236.8 | 279 | 0 | 100.0% |
Leishmania major strain Friedlin | 8315 | 36 | 231.0 | 263 | 0 | 100.0% |
Leishmania panamensis | 7711 | 35 | 220.3 | 265 | 0 | 100.0% |
Leptomonas pyrrhocoris | 9872 | 51 | 193.4 | 315 | 7 | 99.9% |
Leptomonas seymouri | 8485 | 584 | 14.1 | 23 | 274 | 96.8% |
Perkinsela sp. CCAP 1560.4 | 5252 | 227 | 22.9 | 43 | 52 | 99.0% |
Phytomonas sp. isolate EM1 | 6381 | 87 | 73.1 | 193 | 17 | 99.7% |
Phytomonas sp. isolate Hart1 | 6451 | 56 | 115.0 | 477 | 10 | 99.8% |
Strigomonas culicis | 12083 | 465 | 2.7 | 3 | 10810 | 10.5% |
Trypanosoma brucei | 8747 | 11 | 795.2 | 1224 | 0 | 100.0% |
Trypanosoma conorhini | 10148 | 1333 | 7.4 | 11 | 259 | 97.4% |
Trypanosoma cruzi marinkellei | 10104 | 1670 | 3.2 | 3 | 4759 | 52.9% |
Trypanosoma equiperdum | 7668 | 683 | 10.6 | 20 | 450 | 94.1% |
Trypanosoma rangeli SC58 | 7475 | 35 | 2.2 | 2 | 7398 | 1.0% |
Trypanosoma theileri | 11312 | 189 | 59.5 | 207 | 64 | 99.4% |
|
Fornicata | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Giardia lamblia ATCC 50803 | 7364 | 112 | 65.3 | 146 | 49 | 99.3% |
Kipferlia bialata | 3622 | 423 | 2.2 | 2 | 2685 | 25.9% |
Spironucleus salmonicida | 8333 | 214 | 38.9 | 99 | 10 | 99.9% |
|
Cryptophyta | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Chroomonas mesostigmatica CCMP1168 | 505 | 3 | 168.3 | 169 | 0 | 100.0% |
Cryptomonas paramecium | 466 | 3 | 155.3 | 155 | 0 | 100.0% |
Guillardia theta CCMP2712 | 24945 | 502 | 49.5 | 161 | 109 | 99.6% |
|
Amoebozoa | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Acanthamoeba castellanii str. Neff | 14973 | 374 | 40.0 | 149 | 8 | 99.9% |
Cavenderia fasciculata | 12165 | 23 | 528.8 | 955 | 2 | 100.0% |
Dictyostelium discoideum AX4 | 13209 | 34 | 388.4 | 2098 | 3 | 100.0% |
Dictyostelium purpureum | 12399 | 763 | 16.2 | 25 | 30 | 99.8% |
Entamoeba dispar SAW760 | 8811 | 802 | 10.2 | 19 | 633 | 92.8% |
Entamoeba histolytica HM-1 IMSS | 8113 | 505 | 15.5 | 28 | 292 | 96.4% |
Entamoeba invadens IP1 | 9925 | 305 | 32.0 | 94 | 179 | 98.2% |
Entamoeba nuttalli P19 | 6187 | 1206 | 4.8 | 6 | 393 | 93.6% |
Planoprotostelium fungivorum | 17124 | 748 | 22.8 | 49 | 70 | 99.6% |
Tieghemostelium lacteum | 10225 | 46 | 222.1 | 470 | 8 | 99.9% |
|
Opisthokonta | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Capsaspora owczarzaki ATCC 30864 | 8758 | 65 | 134.5 | 529 | 13 | 99.9% |
Fonticula alba | 5901 | 60 | 96.9 | 613 | 87 | 98.5% |
Monosiga brevicollis MX1 | 9172 | 85 | 106.8 | 247 | 93 | 99.0% |
Salpingoeca rosetta | 11624 | 103 | 112.4 | 322 | 47 | 99.6% |
Sphaeroforma arctica JP610 | 18213 | 2199 | 5.8 | 9 | 5481 | 69.9% |
|
Alveolata | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Babesia bigemina | 5079 | 141 | 34.6 | 1252 | 201 | 96.0% |
Babesia bovis | 3703 | 12 | 308.5 | 834 | 1 | 100.0% |
Babesia ovata | 5031 | 70 | 71.8 | 1228 | 6 | 99.9% |
Babesia sp. Xinjiang | 3066 | 35 | 86.9 | 199 | 23 | 99.2% |
Besnoitia besnoiti | 8224 | 124 | 65.8 | 532 | 62 | 99.2% |
Cryptosporidium andersoni | 3876 | 88 | 43.8 | 75 | 20 | 99.5% |
Cryptosporidium meleagridis | 3753 | 47 | 79.7 | 152 | 5 | 99.9% |
Cryptosporidium muris RN66 | 3934 | 26 | 150.7 | 329 | 16 | 99.6% |
Cryptosporidium parvum Iowa II | 3805 | 8 | 475.6 | 460 | 0 | 100.0% |
Cryptosporidium ubiquitum | 3766 | 31 | 121.3 | 286 | 7 | 99.8% |
Cyclospora cayetanensis | 7153 | 946 | 7.1 | 10 | 436 | 93.9% |
Cystoisospora suis | 11543 | 2320 | 4.2 | 5 | 1903 | 83.5% |
Eimeria acervulina | 6867 | 1171 | 5.0 | 7 | 970 | 85.9% |
Eimeria brunetti | 8711 | 1454 | 5.6 | 7 | 605 | 93.1% |
Eimeria maxima | 6057 | 1111 | 4.7 | 6 | 801 | 86.8% |
Eimeria mitis | 8748 | 1975 | 3.1 | 3 | 2664 | 69.5% |
Eimeria praecox | 7635 | 1481 | 3.4 | 4 | 2594 | 66.0% |
Eimeria tenella | 8599 | 748 | 8.6 | 36 | 2152 | 75.0% |
Gregarina niphandrodes | 6375 | 193 | 32.4 | 97 | 121 | 98.1% |
Hammondia hammondi | 8003 | 86 | 92.4 | 227 | 53 | 99.3% |
Ichthyophthirius multifiliis | 8056 | 917 | 8.4 | 13 | 338 | 95.8% |
Oxytricha trifallax | 810 | 102 | 2.6 | 2 | 540 | 33.3% |
Paramecium tetraurelia | 39642 | 417 | 94.4 | 239 | 259 | 99.3% |
Perkinsus marinus ATCC 50983 | 23474 | 1265 | 14.5 | 66 | 5176 | 78.0% |
Plasmodium berghei ANKA | 4903 | 28 | 174.1 | 444 | 28 | 99.4% |
Plasmodium chabaudi chabaudi | 5157 | 31 | 166.2 | 424 | 4 | 99.9% |
Plasmodium coatneyi | 5516 | 14 | 394.0 | 404 | 0 | 100.0% |
Plasmodium cynomolgi strain B | 5716 | 48 | 105.6 | 436 | 649 | 88.6% |
Plasmodium falciparum 3D7 | 5358 | 14 | 382.7 | 412 | 0 | 100.0% |
Plasmodium fragile | 5672 | 190 | 29.6 | 65 | 50 | 99.1% |
Plasmodium gaboni | 5198 | 56 | 86.4 | 357 | 359 | 93.1% |
Plasmodium gallinaceum | 5246 | 86 | 60.6 | 349 | 31 | 99.4% |
Plasmodium gonderi | 5916 | 186 | 30.1 | 368 | 313 | 94.7% |
Plasmodium inui San Antonio 1 | 5832 | 181 | 31.9 | 154 | 64 | 98.9% |
Plasmodium knowlesi strain H | 5102 | 14 | 364.4 | 460 | 0 | 100.0% |
Plasmodium malariae | 6343 | 1241 | 2.7 | 3 | 3048 | 51.9% |
Plasmodium ovale curtisi | 8625 | 1114 | 6.9 | 11 | 922 | 89.3% |
Plasmodium reichenowi | 5040 | 26 | 182.1 | 343 | 306 | 93.9% |
Plasmodium relictum | 345 | 54 | 3.0 | 3 | 182 | 47.2% |
Plasmodium sp. DRC-Itaito | 94 | 20 | 4.3 | 5 | 8 | 91.5% |
Plasmodium sp. gorilla clade G2 | 344 | 58 | 5.8 | 8 | 7 | 98.0% |
Plasmodium vinckei petteri | 5160 | 37 | 138.8 | 369 | 25 | 99.5% |
Plasmodium vivax | 5389 | 56 | 92.5 | 432 | 211 | 96.1% |
Plasmodium yoelii yoelii | 7861 | 2077 | 3.4 | 4 | 854 | 89.1% |
Pseudocohnilembus persalinus | 13179 | 259 | 50.8 | 86 | 12 | 99.9% |
Stentor coeruleus | 31426 | 2048 | 15.1 | 24 | 489 | 98.4% |
Stylonychia lemnae | 20740 | 2883 | 2.3 | 2 | 14251 | 31.3% |
Symbiodinium microadriaticum | 43403 | 2437 | 16.6 | 29 | 2892 | 93.3% |
Tetrahymena thermophila SB210 | 24725 | 517 | 47.3 | 137 | 287 | 98.8% |
Theileria equi strain WA | 5329 | 12 | 444.1 | 1142 | 0 | 100.0% |
Theileria orientalis strain Shintoku | 4002 | 5 | 800.2 | 1011 | 1 | 100.0% |
Theileria parva | 4079 | 9 | 453.2 | 958 | 0 | 100.0% |
Toxoplasma gondii ME49 | 8303 | 29 | 283.4 | 838 | 85 | 99.0% |
Toxoplasma gondii VEG | 8410 | 51 | 162.7 | 522 | 110 | 98.7% |
|
Stramenopiles | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Achlya hypogyna | 14406 | 1067 | 12.8 | 25 | 697 | 95.2% |
Albugo laibachii Nc14 | 13804 | 663 | 20.5 | 37 | 189 | 98.6% |
Aphanomyces astaci | 19119 | 405 | 46.6 | 215 | 250 | 98.7% |
Aphanomyces invadans | 15248 | 215 | 70.3 | 315 | 144 | 99.1% |
Aureococcus anophagefferens | 11520 | 369 | 29.4 | 317 | 660 | 94.3% |
Blastocystis hominis | 6020 | 35 | 171.9 | 306 | 4 | 99.9% |
Ectocarpus siliculosus | 16269 | 357 | 44.7 | 373 | 305 | 98.1% |
Fragilariopsis cylindrus CCMP1102 | 18082 | 146 | 123.5 | 969 | 57 | 99.7% |
Globisporangium ultimum DAOM BR144 | 15290 | 152 | 99.0 | 301 | 239 | 98.4% |
Hondaea fermentalgiana | 11853 | 294 | 38.6 | 77 | 511 | 95.7% |
Hyaloperonospora arabidopsidis Emoy2 | 14321 | 528 | 26.4 | 73 | 371 | 97.4% |
Nannochloropsis gaditana CCMP526 | 3554 | 727 | 4.2 | 5 | 522 | 85.3% |
Nothophytophthora sp. Chile5 | 27122 | 4639 | 5.4 | 7 | 1937 | 92.9% |
Peronospora effusa | 8569 | 622 | 13.6 | 22 | 111 | 98.7% |
Phaeodactylum tricornutum CCAP 1055.1 | 12178 | 71 | 171.3 | 436 | 14 | 99.9% |
Phytophthora cactorum | 23869 | 1810 | 12.4 | 24 | 1418 | 94.1% |
Phytophthora infestans T30-4 | 17785 | 384 | 45.3 | 314 | 392 | 97.8% |
Phytophthora kernoviae 00238.432 | 10650 | 902 | 11.4 | 19 | 367 | 96.6% |
Phytophthora lateralis MPF4 | 11635 | 1469 | 7.2 | 11 | 996 | 91.4% |
Phytophthora megakarya | 34804 | 6903 | 3.8 | 4 | 8812 | 74.7% |
Phytophthora nicotianae | 10521 | 1314 | 7.5 | 11 | 730 | 93.1% |
Phytophthora palmivora var. palmivora | 24674 | 5693 | 3.4 | 4 | 5478 | 77.8% |
Phytophthora parasitica P1569 | 23159 | 2625 | 8.3 | 13 | 1246 | 94.6% |
Phytophthora ramorum | 15605 | 853 | 17.2 | 111 | 929 | 94.0% |
Phytophthora sojae | 26489 | 70 | 378.3 | 2627 | 9 | 100.0% |
Phytopythium vexans DAOM BR484 | 11957 | 1412 | 7.7 | 11 | 1101 | 90.8% |
Plasmopara halstedii | 15469 | 151 | 99.8 | 334 | 401 | 97.4% |
Pseudo-nitzschia multistriata | 11895 | 616 | 19.2 | 33 | 83 | 99.3% |
Pythium aphanidermatum DAOM BR444 | 12305 | 1256 | 9.6 | 15 | 264 | 97.9% |
Pythium arrhenomanes ATCC 12531 | 13805 | 2589 | 4.2 | 5 | 3043 | 78.0% |
Pythium irregulare DAOM BR486 | 13804 | 1920 | 6.3 | 9 | 1803 | 86.9% |
Pythium iwayamai DAOM BR242034 | 15248 | 2862 | 4.3 | 5 | 2975 | 80.5% |
Saprolegnia diclina VS20 | 17359 | 268 | 64.4 | 217 | 90 | 99.5% |
Saprolegnia parasitica CBS 223.65 | 20121 | 1041 | 19.0 | 119 | 332 | 98.3% |
Thalassiosira oceanica | 34500 | 7266 | 2.8 | 3 | 14352 | 58.4% |
Thalassiosira pseudonana CCMP1335 | 11672 | 60 | 194.5 | 710 | 2 | 100.0% |
Thraustotheca clavata | 13174 | 2276 | 5.2 | 7 | 1289 | 90.2% |
|
Other eukaryotes | Genes |
Contigs |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
Emiliania huxleyi CCMP1516 | 38544 | 1557 | 23.3 | 106 | 2289 | 94.1% |
Naegleria gruberi | 15709 | 300 | 51.4 | 175 | 295 | 98.1% |
Thecamonas trahens ATCC 50062 | 10543 | 112 | 94.0 | 158 | 10 | 99.9% |
Tritrichomonas foetus | 25030 | 1291 | 19.3 | 33 | 153 | 99.4% |
|
Ancestors | Genes |
Blocks |
Average size (nb genes) |
N50 size (nb genes) |
Genes not in blocks |
Coverage (%) |
Aconoidasida | 4544 | 231 | 2.4 | 2 | 4001 | 11.9% |
Alveolata | 20710 | 188 | 2.1 | 2 | 20320 | 1.9% |
Amoebozoa | 15353 | 100 | 2.0 | 2 | 15151 | 1.3% |
Aphanomyces | 14378 | 677 | 15.7 | 70 | 3747 | 73.9% |
Apicomplexa | 8325 | 79 | 2.1 | 2 | 8158 | 2.0% |
Babesia | 4017 | 28 | 122.9 | 811 | 577 | 85.6% |
Bacillariaceae | 12400 | 1098 | 3.8 | 4 | 8251 | 33.5% |
Bacillariophycidae | 12157 | 707 | 2.2 | 2 | 10568 | 13.1% |
Bacillariophyta | 13560 | 190 | 2.1 | 2 | 13161 | 2.9% |
Cercozoa | 11774 | 61 | 2.0 | 2 | 11652 | 1.0% |
Ciliophora | 11181 | 87 | 2.1 | 2 | 11002 | 1.6% |
Conoidasida | 7625 | 59 | 2.1 | 2 | 7499 | 1.7% |
Cryptophyta | 8283 | 104 | 2.4 | 2 | 8032 | 3.0% |
Cryptosporidium | 4652 | 48 | 85.0 | 478 | 573 | 87.7% |
Dictyosteliales | 8627 | 1097 | 2.5 | 2 | 5906 | 31.5% |
Dictyostelids | 8444 | 647 | 2.3 | 2 | 6975 | 17.4% |
Dictyostelium | 9116 | 1543 | 3.1 | 3 | 4403 | 51.7% |
Eimeria | 9200 | 1168 | 4.5 | 6 | 3934 | 57.2% |
Eimeriidae | 6721 | 889 | 3.0 | 3 | 4039 | 39.9% |
Eimeriorina | 8364 | 199 | 2.2 | 2 | 7936 | 5.1% |
Entamoeba | 8487 | 707 | 9.1 | 14 | 2087 | 75.4% |
Eukaryota | 22384 | 329 | 2.2 | 2 | 21675 | 3.2% |
Fornicata | 2321 | 12 | 2.0 | 2 | 2297 | 1.0% |
Hexamitidae | 2549 | 11 | 2.0 | 2 | 2527 | 0.9% |
Hymenostomatida | 10579 | 130 | 2.1 | 2 | 10312 | 2.5% |
Ichthyosporea | 8854 | 35 | 2.0 | 2 | 8783 | 0.8% |
Intramacronucleata | 11063 | 70 | 2.1 | 2 | 10919 | 1.3% |
Kinetoplastida | 5059 | 32 | 2.1 | 2 | 4993 | 1.3% |
Leishmania donovani species complex | 8141 | 39 | 204.5 | 259 | 164 | 98.0% |
Leishmania | 8104 | 48 | 162.3 | 257 | 315 | 96.1% |
Leishmaniinae | 8429 | 61 | 123.6 | 246 | 892 | 89.4% |
Leptomonas | 8591 | 70 | 116.3 | 254 | 448 | 94.8% |
Mycetozoa | 10137 | 58 | 2.0 | 2 | 10020 | 1.2% |
NAME_0 | 8157 | 40 | 198.1 | 265 | 233 | 97.1% |
Oligohymenophorea | 12687 | 160 | 2.1 | 2 | 12356 | 2.6% |
Oomycetes | 20982 | 1965 | 4.8 | 6 | 11452 | 45.4% |
Opisthokonta | 14273 | 72 | 2.0 | 2 | 14126 | 1.0% |
Oxytrichidae | 5749 | 2 | 2.0 | 2 | 5745 | 0.1% |
Peronosporaceae | 22297 | 1761 | 6.8 | 11 | 10295 | 53.8% |
Phytophthora | 30330 | 2156 | 7.3 | 14 | 14552 | 52.0% |
Piroplasmida | 3716 | 117 | 25.6 | 107 | 716 | 80.7% |
Plasmodium Haemamoeba | 4722 | 37 | 123.4 | 374 | 156 | 96.7% |
Plasmodium Laverania | 5434 | 32 | 155.3 | 366 | 465 | 91.4% |
Plasmodium Plasmodium | 14795 | 1664 | 7.2 | 11 | 2835 | 80.8% |
Plasmodium Vinckeia | 5925 | 31 | 153.5 | 425 | 1166 | 80.3% |
Plasmodium | 6236 | 57 | 85.9 | 187 | 1338 | 78.5% |
Pyrenomonadales | 8249 | 93 | 2.7 | 2 | 7998 | 3.0% |
Pythiaceae | 22394 | 2563 | 4.8 | 7 | 10074 | 55.0% |
Pythium | 24825 | 3794 | 4.0 | 5 | 9489 | 61.8% |
Rhizaria | 14933 | 91 | 2.0 | 2 | 14750 | 1.2% |
Salpingoecidae | 8315 | 211 | 2.1 | 2 | 7868 | 5.4% |
Saprolegnia | 17062 | 552 | 25.3 | 87 | 3085 | 81.9% |
Saprolegniaceae | 19220 | 892 | 13.1 | 28 | 7503 | 61.0% |
Sarcocystidae | 9205 | 54 | 136.4 | 590 | 1840 | 80.0% |
Stramenopiles | 25376 | 249 | 2.1 | 2 | 24857 | 2.0% |
Strigomonadinae | 7299 | 156 | 2.2 | 2 | 6953 | 4.7% |
Thalassiosira | 12116 | 566 | 2.2 | 2 | 10863 | 10.3% |
Theileria | 3961 | 40 | 86.2 | 604 | 515 | 87.0% |
Toxoplasma gondii | 8090 | 33 | 238.9 | 791 | 207 | 97.4% |
Trypanosoma with unspecified subgenus | 14716 | 1687 | 7.6 | 16 | 1970 | 86.6% |
Trypanosoma | 9109 | 688 | 10.7 | 16 | 1754 | 80.7% |
Trypanosomatidae | 9272 | 627 | 10.3 | 17 | 2815 | 69.6% |
Trypanozoon | 7497 | 152 | 46.3 | 144 | 459 | 93.9% |
unclassified Phytomonas | 6210 | 91 | 62.7 | 193 | 505 | 91.9% |