GenomicusProtists v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for GSPATT00013517001 (Paramecium tetraurelia)	AlignView depth	PhyloView depth
Eukaryota	200 species	2027 homologs (oldest homol. - dupl. node) 1750 homologs (dupl. node) 1288 homologs (dupl. node) 1036 homologs (dupl. node) 518 homologs (dupl. node) 242 homologs (dupl. node) 237 homologs (dupl. node) 227 homologs (dupl. node) 192 homologs (dupl. node) 188 homologs (dupl. node) 83 homologs
Alveolata	77 species	78 homologs
Ciliophora	12 species	13 homologs
Intramacronucleata	10 species	11 homologs
Oligohymenophorea	6 species	6 homologs
Paramecium tetraurelia	1 species	2 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'