Root species for GSPATT00013517001 (Paramecium tetraurelia) | AlignView depth | PhyloView depth | |
---|---|---|---|
Eukaryota | 200 species | 2027 homologs (oldest homol. - dupl. node) 1750 homologs (dupl. node) 1288 homologs (dupl. node) 1036 homologs (dupl. node) 518 homologs (dupl. node) 242 homologs (dupl. node) 237 homologs (dupl. node) 227 homologs (dupl. node) 192 homologs (dupl. node) 188 homologs (dupl. node) 83 homologs | |
Alveolata | 77 species | 78 homologs | |
Ciliophora | 12 species | 13 homologs | |
Intramacronucleata | 10 species | 11 homologs | |
Oligohymenophorea | 6 species | 6 homologs | |
Paramecium tetraurelia | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'