Root species for SODB1 (LMJF_32_1820) (Leishmania major strain Friedlin) | AlignView depth | PhyloView depth | |
---|---|---|---|
Eukaryota | 200 species | 316 homologs (oldest homol. - dupl. node) 277 homologs (dupl. node) 211 homologs (dupl. node) 76 homologs | |
Kinetoplastida | 29 species | 66 homologs | |
Trypanosomatidae | 27 species | 64 homologs (dupl. node) 47 homologs | |
Leishmaniinae | 11 species | 20 homologs | |
Leishmania | 7 species | 12 homologs | |
NAME_0 | 5 species | 10 homologs (dupl. node) 5 homologs | |
Leishmania major strain Friedlin | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'