Root species for PF3D7_0527000 (Plasmodium falciparum 3D7) | AlignView depth | PhyloView depth | |
---|---|---|---|
Eukaryota | 200 species | 2026 homologs (oldest homol. - dupl. node) 1749 homologs (dupl. node) 1287 homologs (dupl. node) 1035 homologs (dupl. node) 517 homologs (dupl. node) 241 homologs (dupl. node) 236 homologs (dupl. node) 226 homologs (dupl. node) 191 homologs (dupl. node) 187 homologs (dupl. node) 82 homologs | |
Alveolata | 77 species | 77 homologs | |
Apicomplexa | 62 species | 60 homologs (dupl. node) 51 homologs (dupl. node) 48 homologs | |
Aconoidasida | 36 species | 33 homologs | |
Plasmodium | 25 species | 22 homologs | |
Plasmodium Laverania | 6 species | 4 homologs | |
Plasmodium falciparum 3D7 | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'