GenomicusProtists v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for SODB1 (LMJF_32_1820) (Leishmania major strain Friedlin)	AlignView depth	PhyloView depth
Eukaryota	200 species	316 homologs (oldest homol. - dupl. node) 277 homologs (dupl. node) 211 homologs (dupl. node) 76 homologs
Kinetoplastida	29 species	66 homologs
Trypanosomatidae	27 species	64 homologs (dupl. node) 47 homologs
Leishmaniinae	11 species	20 homologs
Leishmania	7 species	12 homologs
NAME_0	5 species	10 homologs (dupl. node) 5 homologs
Leishmania major strain Friedlin	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'