Genomicus v03.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Cirobu.g00010576,BMP10,GDF2,NODAL (KH.L106.16) (Cirobu)		AlignView depth	PhyloView depth
40_Deuterostomia	~10 Mya	41 species	60 homologs (oldest homol.)
36_Chordata	~10 Mya	37 species	56 homologs (dupl. node) 26 homologs
32_Olfactores	~10 Mya	33 species	25 homologs
20_Ascidiacea	~10 Mya	21 species	24 homologs (dupl. node) 17 homologs
19_Phlebobranchia	~10 Mya	7 species	7 homologs
15_Ciona	~10 Mya	3 species	3 homologs
Cirobu	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'